How many miles have you put on your rig? My loud clunking shift disappeared after first oil change around 100 miles. It's almost unnoticeable now. You have to pay attention and listen for it. If someone who wasn't aware the Honda shifted rode with me, they wouldn't know it was shifting. My rig did get really loud shifts when my clutches went out though.
Rattles suck but can totally be fixed if they bother you that much.
The clutch issue sucks, it needs to be fixed, but they will cover you. I had mine replaced. I'm not really worried about it anymore. I think 3% is pretty high to write it off as a lemon law.... These aren't FORDS for Christ sake!
And the steam issue evidently just takes a bildge fan under the seat with a little seal kit. I'm working on some stuff and I'll let you know.
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