Man this has to be a bummer, definitely do all of the following suggested:
Ensure no water is in the air intake and the filters are clean and dry or replaced.
Drain engine oil and replace both engine and DCT filters.
Drain Sub-transmission
Drain front and rear differentials
Remove fuel tank and completely empty and dry it out ensuring the lines and fuel pump are clear of and liquid.
Replace all fluids appropriately:
P1000 - Honda Pioneer 1000 Oil Change Guide!
P1000 - Sub-Transmission Oil change - Honda Pioneer 1000
P1000 - Differential Oil Change Front & Rear - Honda Pioneer 1000
Fuel tank breather hose - IMPORTANT if you ride water!
Engine Oil
Oil Filter Part # - 15412-HP7-A01 Buy one here --> http://amzn.to/1Qxj6tb
DCT Oil Filter part # 15412-MGS-D21 Buy one here --> http://amzn.to/1Qxj9oV
Honda recommends a API classification of SG or higher, do not use oils labeled as energy conserving or resource conserving.
- Viscosity (weight)
SAE 10W-30. Other approved colder weather areas can use 5W-30, or 0W-30
- JASO T 903 standard - MA
- Suggested oil - Pro Honda GN4 4-stroke oil or Honda 4-stroke oils or and equivalent 4-stroke motorcycle oil.
---- 5.5 liters (5.8 US qt) after draining.
---- 5.7 liters (6.0 US qt) after draining and engine oil filter change.
---- 5.8 liters (6.1 US qt) after draining, engine oil filter change and DCT oil filter change.
---- 7.2 liters (7.6 US qt) after disassemble.
Sub-Transmission
Honda recommends a API classification of SG or higher, do not use oils labeled as energy conserving or resource conserving.
- Viscosity (weigt)
SAE 10W-30. Other approved colder weather areas can use 5W-30, or 0W-30
- JASO T 903 standard - MA
- Suggested oil - Pro Honda GN4 4-stroke oil or Honda 4-stroke oils or and equivalent 4-stroke motorcycle oil.
---- 1.2 liters (1.3 US qt) after draining.
---- 1.4 liters (1.5 US qt) after disassembly.
Differential Oil:
Use Honda shaft drive oil or equivalent hypoid gear oil SAE 80.
- Front
---- 11.5 US oz at draining
---- 16.9 US oz at disassemble
- Rear
---- 15.9 US oz at draining
---- 18.6 US oz at disassemble