The base model 3 seater was an anomaly to me, I don't know of anybody who'd want 1 of these. I've sold very few at either dealership I worked for.
My pick would be a EPS 3 seat or if you need the extra seating a base 5 seat.
Reasons:
1. The door panels are just going to get scratched to hell anyways. So buy the color fender and hood you want later if you cant stand the green or red. You can add on any color side panels later if you see fit as well.
2. LED headlights, can be purchased later for $400 (retail) Everybody puts lightbars everywhere anyways
3. Wheels, Everyone buys wheels and tires for their SXS and if wheels don't strike your fancy, someone will have a deluxe set for sale so you can upgrade to a 14 inch wheel. That's the only downfall to the base models for me 12 inch wheels.
I haven't gotten to play around in a I-4wd equipped model yet to see if that would strike my fancy or not. But that and the suspension are the only real things I can see that would make me upgrade to an LE. The bumper doesn't do anything for me, storage can be purchased later on if wanted and who cares about the painted suspension. Krylon can fix that.